Sindbad~EG File Manager
from __future__ import annotations
from typing import (
TYPE_CHECKING,
Any,
Callable,
Literal,
overload,
)
import warnings
import numpy as np
from pandas._libs import (
lib,
missing as libmissing,
)
from pandas._libs.tslibs import is_supported_dtype
from pandas._typing import (
ArrayLike,
AstypeArg,
AxisInt,
DtypeObj,
FillnaOptions,
InterpolateOptions,
NpDtype,
PositionalIndexer,
Scalar,
ScalarIndexer,
Self,
SequenceIndexer,
Shape,
npt,
)
from pandas.compat import (
IS64,
is_platform_windows,
)
from pandas.errors import AbstractMethodError
from pandas.util._decorators import doc
from pandas.util._validators import validate_fillna_kwargs
from pandas.core.dtypes.base import ExtensionDtype
from pandas.core.dtypes.common import (
is_bool,
is_integer_dtype,
is_list_like,
is_scalar,
is_string_dtype,
pandas_dtype,
)
from pandas.core.dtypes.dtypes import BaseMaskedDtype
from pandas.core.dtypes.missing import (
array_equivalent,
is_valid_na_for_dtype,
isna,
notna,
)
from pandas.core import (
algorithms as algos,
arraylike,
missing,
nanops,
ops,
)
from pandas.core.algorithms import (
factorize_array,
isin,
map_array,
mode,
take,
)
from pandas.core.array_algos import (
masked_accumulations,
masked_reductions,
)
from pandas.core.array_algos.quantile import quantile_with_mask
from pandas.core.arraylike import OpsMixin
from pandas.core.arrays._utils import to_numpy_dtype_inference
from pandas.core.arrays.base import ExtensionArray
from pandas.core.construction import (
array as pd_array,
ensure_wrapped_if_datetimelike,
extract_array,
)
from pandas.core.indexers import check_array_indexer
from pandas.core.ops import invalid_comparison
from pandas.core.util.hashing import hash_array
if TYPE_CHECKING:
from collections.abc import (
Iterator,
Sequence,
)
from pandas import Series
from pandas.core.arrays import BooleanArray
from pandas._typing import (
NumpySorter,
NumpyValueArrayLike,
)
from pandas.core.arrays import FloatingArray
from pandas.compat.numpy import function as nv
class BaseMaskedArray(OpsMixin, ExtensionArray):
"""
Base class for masked arrays (which use _data and _mask to store the data).
numpy based
"""
# The value used to fill '_data' to avoid upcasting
_internal_fill_value: Scalar
# our underlying data and mask are each ndarrays
_data: np.ndarray
_mask: npt.NDArray[np.bool_]
# Fill values used for any/all
_truthy_value = Scalar # bool(_truthy_value) = True
_falsey_value = Scalar # bool(_falsey_value) = False
@classmethod
def _simple_new(cls, values: np.ndarray, mask: npt.NDArray[np.bool_]) -> Self:
result = BaseMaskedArray.__new__(cls)
result._data = values
result._mask = mask
return result
def __init__(
self, values: np.ndarray, mask: npt.NDArray[np.bool_], copy: bool = False
) -> None:
# values is supposed to already be validated in the subclass
if not (isinstance(mask, np.ndarray) and mask.dtype == np.bool_):
raise TypeError(
"mask should be boolean numpy array. Use "
"the 'pd.array' function instead"
)
if values.shape != mask.shape:
raise ValueError("values.shape must match mask.shape")
if copy:
values = values.copy()
mask = mask.copy()
self._data = values
self._mask = mask
@classmethod
def _from_sequence(cls, scalars, *, dtype=None, copy: bool = False) -> Self:
values, mask = cls._coerce_to_array(scalars, dtype=dtype, copy=copy)
return cls(values, mask)
@classmethod
@doc(ExtensionArray._empty)
def _empty(cls, shape: Shape, dtype: ExtensionDtype):
values = np.empty(shape, dtype=dtype.type)
values.fill(cls._internal_fill_value)
mask = np.ones(shape, dtype=bool)
result = cls(values, mask)
if not isinstance(result, cls) or dtype != result.dtype:
raise NotImplementedError(
f"Default 'empty' implementation is invalid for dtype='{dtype}'"
)
return result
def _formatter(self, boxed: bool = False) -> Callable[[Any], str | None]:
# NEP 51: https://github.com/numpy/numpy/pull/22449
return str
@property
def dtype(self) -> BaseMaskedDtype:
raise AbstractMethodError(self)
@overload
def __getitem__(self, item: ScalarIndexer) -> Any:
...
@overload
def __getitem__(self, item: SequenceIndexer) -> Self:
...
def __getitem__(self, item: PositionalIndexer) -> Self | Any:
item = check_array_indexer(self, item)
newmask = self._mask[item]
if is_bool(newmask):
# This is a scalar indexing
if newmask:
return self.dtype.na_value
return self._data[item]
return self._simple_new(self._data[item], newmask)
def _pad_or_backfill(
self,
*,
method: FillnaOptions,
limit: int | None = None,
limit_area: Literal["inside", "outside"] | None = None,
copy: bool = True,
) -> Self:
mask = self._mask
if mask.any():
func = missing.get_fill_func(method, ndim=self.ndim)
npvalues = self._data.T
new_mask = mask.T
if copy:
npvalues = npvalues.copy()
new_mask = new_mask.copy()
elif limit_area is not None:
mask = mask.copy()
func(npvalues, limit=limit, mask=new_mask)
if limit_area is not None and not mask.all():
mask = mask.T
neg_mask = ~mask
first = neg_mask.argmax()
last = len(neg_mask) - neg_mask[::-1].argmax() - 1
if limit_area == "inside":
new_mask[:first] |= mask[:first]
new_mask[last + 1 :] |= mask[last + 1 :]
elif limit_area == "outside":
new_mask[first + 1 : last] |= mask[first + 1 : last]
if copy:
return self._simple_new(npvalues.T, new_mask.T)
else:
return self
else:
if copy:
new_values = self.copy()
else:
new_values = self
return new_values
@doc(ExtensionArray.fillna)
def fillna(
self, value=None, method=None, limit: int | None = None, copy: bool = True
) -> Self:
value, method = validate_fillna_kwargs(value, method)
mask = self._mask
value = missing.check_value_size(value, mask, len(self))
if mask.any():
if method is not None:
func = missing.get_fill_func(method, ndim=self.ndim)
npvalues = self._data.T
new_mask = mask.T
if copy:
npvalues = npvalues.copy()
new_mask = new_mask.copy()
func(npvalues, limit=limit, mask=new_mask)
return self._simple_new(npvalues.T, new_mask.T)
else:
# fill with value
if copy:
new_values = self.copy()
else:
new_values = self[:]
new_values[mask] = value
else:
if copy:
new_values = self.copy()
else:
new_values = self[:]
return new_values
@classmethod
def _coerce_to_array(
cls, values, *, dtype: DtypeObj, copy: bool = False
) -> tuple[np.ndarray, np.ndarray]:
raise AbstractMethodError(cls)
def _validate_setitem_value(self, value):
"""
Check if we have a scalar that we can cast losslessly.
Raises
------
TypeError
"""
kind = self.dtype.kind
# TODO: get this all from np_can_hold_element?
if kind == "b":
if lib.is_bool(value):
return value
elif kind == "f":
if lib.is_integer(value) or lib.is_float(value):
return value
else:
if lib.is_integer(value) or (lib.is_float(value) and value.is_integer()):
return value
# TODO: unsigned checks
# Note: without the "str" here, the f-string rendering raises in
# py38 builds.
raise TypeError(f"Invalid value '{str(value)}' for dtype {self.dtype}")
def __setitem__(self, key, value) -> None:
key = check_array_indexer(self, key)
if is_scalar(value):
if is_valid_na_for_dtype(value, self.dtype):
self._mask[key] = True
else:
value = self._validate_setitem_value(value)
self._data[key] = value
self._mask[key] = False
return
value, mask = self._coerce_to_array(value, dtype=self.dtype)
self._data[key] = value
self._mask[key] = mask
def __contains__(self, key) -> bool:
if isna(key) and key is not self.dtype.na_value:
# GH#52840
if self._data.dtype.kind == "f" and lib.is_float(key):
return bool((np.isnan(self._data) & ~self._mask).any())
return bool(super().__contains__(key))
def __iter__(self) -> Iterator:
if self.ndim == 1:
if not self._hasna:
for val in self._data:
yield val
else:
na_value = self.dtype.na_value
for isna_, val in zip(self._mask, self._data):
if isna_:
yield na_value
else:
yield val
else:
for i in range(len(self)):
yield self[i]
def __len__(self) -> int:
return len(self._data)
@property
def shape(self) -> Shape:
return self._data.shape
@property
def ndim(self) -> int:
return self._data.ndim
def swapaxes(self, axis1, axis2) -> Self:
data = self._data.swapaxes(axis1, axis2)
mask = self._mask.swapaxes(axis1, axis2)
return self._simple_new(data, mask)
def delete(self, loc, axis: AxisInt = 0) -> Self:
data = np.delete(self._data, loc, axis=axis)
mask = np.delete(self._mask, loc, axis=axis)
return self._simple_new(data, mask)
def reshape(self, *args, **kwargs) -> Self:
data = self._data.reshape(*args, **kwargs)
mask = self._mask.reshape(*args, **kwargs)
return self._simple_new(data, mask)
def ravel(self, *args, **kwargs) -> Self:
# TODO: need to make sure we have the same order for data/mask
data = self._data.ravel(*args, **kwargs)
mask = self._mask.ravel(*args, **kwargs)
return type(self)(data, mask)
@property
def T(self) -> Self:
return self._simple_new(self._data.T, self._mask.T)
def round(self, decimals: int = 0, *args, **kwargs):
"""
Round each value in the array a to the given number of decimals.
Parameters
----------
decimals : int, default 0
Number of decimal places to round to. If decimals is negative,
it specifies the number of positions to the left of the decimal point.
*args, **kwargs
Additional arguments and keywords have no effect but might be
accepted for compatibility with NumPy.
Returns
-------
NumericArray
Rounded values of the NumericArray.
See Also
--------
numpy.around : Round values of an np.array.
DataFrame.round : Round values of a DataFrame.
Series.round : Round values of a Series.
"""
if self.dtype.kind == "b":
return self
nv.validate_round(args, kwargs)
values = np.round(self._data, decimals=decimals, **kwargs)
# Usually we'll get same type as self, but ndarray[bool] casts to float
return self._maybe_mask_result(values, self._mask.copy())
# ------------------------------------------------------------------
# Unary Methods
def __invert__(self) -> Self:
return self._simple_new(~self._data, self._mask.copy())
def __neg__(self) -> Self:
return self._simple_new(-self._data, self._mask.copy())
def __pos__(self) -> Self:
return self.copy()
def __abs__(self) -> Self:
return self._simple_new(abs(self._data), self._mask.copy())
# ------------------------------------------------------------------
def _values_for_json(self) -> np.ndarray:
return np.asarray(self, dtype=object)
def to_numpy(
self,
dtype: npt.DTypeLike | None = None,
copy: bool = False,
na_value: object = lib.no_default,
) -> np.ndarray:
"""
Convert to a NumPy Array.
By default converts to an object-dtype NumPy array. Specify the `dtype` and
`na_value` keywords to customize the conversion.
Parameters
----------
dtype : dtype, default object
The numpy dtype to convert to.
copy : bool, default False
Whether to ensure that the returned value is a not a view on
the array. Note that ``copy=False`` does not *ensure* that
``to_numpy()`` is no-copy. Rather, ``copy=True`` ensure that
a copy is made, even if not strictly necessary. This is typically
only possible when no missing values are present and `dtype`
is the equivalent numpy dtype.
na_value : scalar, optional
Scalar missing value indicator to use in numpy array. Defaults
to the native missing value indicator of this array (pd.NA).
Returns
-------
numpy.ndarray
Examples
--------
An object-dtype is the default result
>>> a = pd.array([True, False, pd.NA], dtype="boolean")
>>> a.to_numpy()
array([True, False, <NA>], dtype=object)
When no missing values are present, an equivalent dtype can be used.
>>> pd.array([True, False], dtype="boolean").to_numpy(dtype="bool")
array([ True, False])
>>> pd.array([1, 2], dtype="Int64").to_numpy("int64")
array([1, 2])
However, requesting such dtype will raise a ValueError if
missing values are present and the default missing value :attr:`NA`
is used.
>>> a = pd.array([True, False, pd.NA], dtype="boolean")
>>> a
<BooleanArray>
[True, False, <NA>]
Length: 3, dtype: boolean
>>> a.to_numpy(dtype="bool")
Traceback (most recent call last):
...
ValueError: cannot convert to bool numpy array in presence of missing values
Specify a valid `na_value` instead
>>> a.to_numpy(dtype="bool", na_value=False)
array([ True, False, False])
"""
hasna = self._hasna
dtype, na_value = to_numpy_dtype_inference(self, dtype, na_value, hasna)
if dtype is None:
dtype = object
if hasna:
if (
dtype != object
and not is_string_dtype(dtype)
and na_value is libmissing.NA
):
raise ValueError(
f"cannot convert to '{dtype}'-dtype NumPy array "
"with missing values. Specify an appropriate 'na_value' "
"for this dtype."
)
# don't pass copy to astype -> always need a copy since we are mutating
with warnings.catch_warnings():
warnings.filterwarnings("ignore", category=RuntimeWarning)
data = self._data.astype(dtype)
data[self._mask] = na_value
else:
with warnings.catch_warnings():
warnings.filterwarnings("ignore", category=RuntimeWarning)
data = self._data.astype(dtype, copy=copy)
return data
@doc(ExtensionArray.tolist)
def tolist(self):
if self.ndim > 1:
return [x.tolist() for x in self]
dtype = None if self._hasna else self._data.dtype
return self.to_numpy(dtype=dtype, na_value=libmissing.NA).tolist()
@overload
def astype(self, dtype: npt.DTypeLike, copy: bool = ...) -> np.ndarray:
...
@overload
def astype(self, dtype: ExtensionDtype, copy: bool = ...) -> ExtensionArray:
...
@overload
def astype(self, dtype: AstypeArg, copy: bool = ...) -> ArrayLike:
...
def astype(self, dtype: AstypeArg, copy: bool = True) -> ArrayLike:
dtype = pandas_dtype(dtype)
if dtype == self.dtype:
if copy:
return self.copy()
return self
# if we are astyping to another nullable masked dtype, we can fastpath
if isinstance(dtype, BaseMaskedDtype):
# TODO deal with NaNs for FloatingArray case
with warnings.catch_warnings():
warnings.filterwarnings("ignore", category=RuntimeWarning)
# TODO: Is rounding what we want long term?
data = self._data.astype(dtype.numpy_dtype, copy=copy)
# mask is copied depending on whether the data was copied, and
# not directly depending on the `copy` keyword
mask = self._mask if data is self._data else self._mask.copy()
cls = dtype.construct_array_type()
return cls(data, mask, copy=False)
if isinstance(dtype, ExtensionDtype):
eacls = dtype.construct_array_type()
return eacls._from_sequence(self, dtype=dtype, copy=copy)
na_value: float | np.datetime64 | lib.NoDefault
# coerce
if dtype.kind == "f":
# In astype, we consider dtype=float to also mean na_value=np.nan
na_value = np.nan
elif dtype.kind == "M":
na_value = np.datetime64("NaT")
else:
na_value = lib.no_default
# to_numpy will also raise, but we get somewhat nicer exception messages here
if dtype.kind in "iu" and self._hasna:
raise ValueError("cannot convert NA to integer")
if dtype.kind == "b" and self._hasna:
# careful: astype_nansafe converts np.nan to True
raise ValueError("cannot convert float NaN to bool")
data = self.to_numpy(dtype=dtype, na_value=na_value, copy=copy)
return data
__array_priority__ = 1000 # higher than ndarray so ops dispatch to us
def __array__(
self, dtype: NpDtype | None = None, copy: bool | None = None
) -> np.ndarray:
"""
the array interface, return my values
We return an object array here to preserve our scalar values
"""
return self.to_numpy(dtype=dtype)
_HANDLED_TYPES: tuple[type, ...]
def __array_ufunc__(self, ufunc: np.ufunc, method: str, *inputs, **kwargs):
# For MaskedArray inputs, we apply the ufunc to ._data
# and mask the result.
out = kwargs.get("out", ())
for x in inputs + out:
if not isinstance(x, self._HANDLED_TYPES + (BaseMaskedArray,)):
return NotImplemented
# for binary ops, use our custom dunder methods
result = arraylike.maybe_dispatch_ufunc_to_dunder_op(
self, ufunc, method, *inputs, **kwargs
)
if result is not NotImplemented:
return result
if "out" in kwargs:
# e.g. test_ufunc_with_out
return arraylike.dispatch_ufunc_with_out(
self, ufunc, method, *inputs, **kwargs
)
if method == "reduce":
result = arraylike.dispatch_reduction_ufunc(
self, ufunc, method, *inputs, **kwargs
)
if result is not NotImplemented:
return result
mask = np.zeros(len(self), dtype=bool)
inputs2 = []
for x in inputs:
if isinstance(x, BaseMaskedArray):
mask |= x._mask
inputs2.append(x._data)
else:
inputs2.append(x)
def reconstruct(x: np.ndarray):
# we don't worry about scalar `x` here, since we
# raise for reduce up above.
from pandas.core.arrays import (
BooleanArray,
FloatingArray,
IntegerArray,
)
if x.dtype.kind == "b":
m = mask.copy()
return BooleanArray(x, m)
elif x.dtype.kind in "iu":
m = mask.copy()
return IntegerArray(x, m)
elif x.dtype.kind == "f":
m = mask.copy()
if x.dtype == np.float16:
# reached in e.g. np.sqrt on BooleanArray
# we don't support float16
x = x.astype(np.float32)
return FloatingArray(x, m)
else:
x[mask] = np.nan
return x
result = getattr(ufunc, method)(*inputs2, **kwargs)
if ufunc.nout > 1:
# e.g. np.divmod
return tuple(reconstruct(x) for x in result)
elif method == "reduce":
# e.g. np.add.reduce; test_ufunc_reduce_raises
if self._mask.any():
return self._na_value
return result
else:
return reconstruct(result)
def __arrow_array__(self, type=None):
"""
Convert myself into a pyarrow Array.
"""
import pyarrow as pa
return pa.array(self._data, mask=self._mask, type=type)
@property
def _hasna(self) -> bool:
# Note: this is expensive right now! The hope is that we can
# make this faster by having an optional mask, but not have to change
# source code using it..
# error: Incompatible return value type (got "bool_", expected "bool")
return self._mask.any() # type: ignore[return-value]
def _propagate_mask(
self, mask: npt.NDArray[np.bool_] | None, other
) -> npt.NDArray[np.bool_]:
if mask is None:
mask = self._mask.copy() # TODO: need test for BooleanArray needing a copy
if other is libmissing.NA:
# GH#45421 don't alter inplace
mask = mask | True
elif is_list_like(other) and len(other) == len(mask):
mask = mask | isna(other)
else:
mask = self._mask | mask
# Incompatible return value type (got "Optional[ndarray[Any, dtype[bool_]]]",
# expected "ndarray[Any, dtype[bool_]]")
return mask # type: ignore[return-value]
def _arith_method(self, other, op):
op_name = op.__name__
omask = None
if (
not hasattr(other, "dtype")
and is_list_like(other)
and len(other) == len(self)
):
# Try inferring masked dtype instead of casting to object
other = pd_array(other)
other = extract_array(other, extract_numpy=True)
if isinstance(other, BaseMaskedArray):
other, omask = other._data, other._mask
elif is_list_like(other):
if not isinstance(other, ExtensionArray):
other = np.asarray(other)
if other.ndim > 1:
raise NotImplementedError("can only perform ops with 1-d structures")
# We wrap the non-masked arithmetic logic used for numpy dtypes
# in Series/Index arithmetic ops.
other = ops.maybe_prepare_scalar_for_op(other, (len(self),))
pd_op = ops.get_array_op(op)
other = ensure_wrapped_if_datetimelike(other)
if op_name in {"pow", "rpow"} and isinstance(other, np.bool_):
# Avoid DeprecationWarning: In future, it will be an error
# for 'np.bool_' scalars to be interpreted as an index
# e.g. test_array_scalar_like_equivalence
other = bool(other)
mask = self._propagate_mask(omask, other)
if other is libmissing.NA:
result = np.ones_like(self._data)
if self.dtype.kind == "b":
if op_name in {
"floordiv",
"rfloordiv",
"pow",
"rpow",
"truediv",
"rtruediv",
}:
# GH#41165 Try to match non-masked Series behavior
# This is still imperfect GH#46043
raise NotImplementedError(
f"operator '{op_name}' not implemented for bool dtypes"
)
if op_name in {"mod", "rmod"}:
dtype = "int8"
else:
dtype = "bool"
result = result.astype(dtype)
elif "truediv" in op_name and self.dtype.kind != "f":
# The actual data here doesn't matter since the mask
# will be all-True, but since this is division, we want
# to end up with floating dtype.
result = result.astype(np.float64)
else:
# Make sure we do this before the "pow" mask checks
# to get an expected exception message on shape mismatch.
if self.dtype.kind in "iu" and op_name in ["floordiv", "mod"]:
# TODO(GH#30188) ATM we don't match the behavior of non-masked
# types with respect to floordiv-by-zero
pd_op = op
with np.errstate(all="ignore"):
result = pd_op(self._data, other)
if op_name == "pow":
# 1 ** x is 1.
mask = np.where((self._data == 1) & ~self._mask, False, mask)
# x ** 0 is 1.
if omask is not None:
mask = np.where((other == 0) & ~omask, False, mask)
elif other is not libmissing.NA:
mask = np.where(other == 0, False, mask)
elif op_name == "rpow":
# 1 ** x is 1.
if omask is not None:
mask = np.where((other == 1) & ~omask, False, mask)
elif other is not libmissing.NA:
mask = np.where(other == 1, False, mask)
# x ** 0 is 1.
mask = np.where((self._data == 0) & ~self._mask, False, mask)
return self._maybe_mask_result(result, mask)
_logical_method = _arith_method
def _cmp_method(self, other, op) -> BooleanArray:
from pandas.core.arrays import BooleanArray
mask = None
if isinstance(other, BaseMaskedArray):
other, mask = other._data, other._mask
elif is_list_like(other):
other = np.asarray(other)
if other.ndim > 1:
raise NotImplementedError("can only perform ops with 1-d structures")
if len(self) != len(other):
raise ValueError("Lengths must match to compare")
if other is libmissing.NA:
# numpy does not handle pd.NA well as "other" scalar (it returns
# a scalar False instead of an array)
# This may be fixed by NA.__array_ufunc__. Revisit this check
# once that's implemented.
result = np.zeros(self._data.shape, dtype="bool")
mask = np.ones(self._data.shape, dtype="bool")
else:
with warnings.catch_warnings():
# numpy may show a FutureWarning or DeprecationWarning:
# elementwise comparison failed; returning scalar instead,
# but in the future will perform elementwise comparison
# before returning NotImplemented. We fall back to the correct
# behavior today, so that should be fine to ignore.
warnings.filterwarnings("ignore", "elementwise", FutureWarning)
warnings.filterwarnings("ignore", "elementwise", DeprecationWarning)
method = getattr(self._data, f"__{op.__name__}__")
result = method(other)
if result is NotImplemented:
result = invalid_comparison(self._data, other, op)
mask = self._propagate_mask(mask, other)
return BooleanArray(result, mask, copy=False)
def _maybe_mask_result(
self, result: np.ndarray | tuple[np.ndarray, np.ndarray], mask: np.ndarray
):
"""
Parameters
----------
result : array-like or tuple[array-like]
mask : array-like bool
"""
if isinstance(result, tuple):
# i.e. divmod
div, mod = result
return (
self._maybe_mask_result(div, mask),
self._maybe_mask_result(mod, mask),
)
if result.dtype.kind == "f":
from pandas.core.arrays import FloatingArray
return FloatingArray(result, mask, copy=False)
elif result.dtype.kind == "b":
from pandas.core.arrays import BooleanArray
return BooleanArray(result, mask, copy=False)
elif lib.is_np_dtype(result.dtype, "m") and is_supported_dtype(result.dtype):
# e.g. test_numeric_arr_mul_tdscalar_numexpr_path
from pandas.core.arrays import TimedeltaArray
result[mask] = result.dtype.type("NaT")
if not isinstance(result, TimedeltaArray):
return TimedeltaArray._simple_new(result, dtype=result.dtype)
return result
elif result.dtype.kind in "iu":
from pandas.core.arrays import IntegerArray
return IntegerArray(result, mask, copy=False)
else:
result[mask] = np.nan
return result
def isna(self) -> np.ndarray:
return self._mask.copy()
@property
def _na_value(self):
return self.dtype.na_value
@property
def nbytes(self) -> int:
return self._data.nbytes + self._mask.nbytes
@classmethod
def _concat_same_type(
cls,
to_concat: Sequence[Self],
axis: AxisInt = 0,
) -> Self:
data = np.concatenate([x._data for x in to_concat], axis=axis)
mask = np.concatenate([x._mask for x in to_concat], axis=axis)
return cls(data, mask)
def _hash_pandas_object(
self, *, encoding: str, hash_key: str, categorize: bool
) -> npt.NDArray[np.uint64]:
hashed_array = hash_array(
self._data, encoding=encoding, hash_key=hash_key, categorize=categorize
)
hashed_array[self.isna()] = hash(self.dtype.na_value)
return hashed_array
def take(
self,
indexer,
*,
allow_fill: bool = False,
fill_value: Scalar | None = None,
axis: AxisInt = 0,
) -> Self:
# we always fill with 1 internally
# to avoid upcasting
data_fill_value = self._internal_fill_value if isna(fill_value) else fill_value
result = take(
self._data,
indexer,
fill_value=data_fill_value,
allow_fill=allow_fill,
axis=axis,
)
mask = take(
self._mask, indexer, fill_value=True, allow_fill=allow_fill, axis=axis
)
# if we are filling
# we only fill where the indexer is null
# not existing missing values
# TODO(jreback) what if we have a non-na float as a fill value?
if allow_fill and notna(fill_value):
fill_mask = np.asarray(indexer) == -1
result[fill_mask] = fill_value
mask = mask ^ fill_mask
return self._simple_new(result, mask)
# error: Return type "BooleanArray" of "isin" incompatible with return type
# "ndarray" in supertype "ExtensionArray"
def isin(self, values: ArrayLike) -> BooleanArray: # type: ignore[override]
from pandas.core.arrays import BooleanArray
# algorithms.isin will eventually convert values to an ndarray, so no extra
# cost to doing it here first
values_arr = np.asarray(values)
result = isin(self._data, values_arr)
if self._hasna:
values_have_NA = values_arr.dtype == object and any(
val is self.dtype.na_value for val in values_arr
)
# For now, NA does not propagate so set result according to presence of NA,
# see https://github.com/pandas-dev/pandas/pull/38379 for some discussion
result[self._mask] = values_have_NA
mask = np.zeros(self._data.shape, dtype=bool)
return BooleanArray(result, mask, copy=False)
def copy(self) -> Self:
data = self._data.copy()
mask = self._mask.copy()
return self._simple_new(data, mask)
@doc(ExtensionArray.duplicated)
def duplicated(
self, keep: Literal["first", "last", False] = "first"
) -> npt.NDArray[np.bool_]:
values = self._data
mask = self._mask
return algos.duplicated(values, keep=keep, mask=mask)
def unique(self) -> Self:
"""
Compute the BaseMaskedArray of unique values.
Returns
-------
uniques : BaseMaskedArray
"""
uniques, mask = algos.unique_with_mask(self._data, self._mask)
return self._simple_new(uniques, mask)
@doc(ExtensionArray.searchsorted)
def searchsorted(
self,
value: NumpyValueArrayLike | ExtensionArray,
side: Literal["left", "right"] = "left",
sorter: NumpySorter | None = None,
) -> npt.NDArray[np.intp] | np.intp:
if self._hasna:
raise ValueError(
"searchsorted requires array to be sorted, which is impossible "
"with NAs present."
)
if isinstance(value, ExtensionArray):
value = value.astype(object)
# Base class searchsorted would cast to object, which is *much* slower.
return self._data.searchsorted(value, side=side, sorter=sorter)
@doc(ExtensionArray.factorize)
def factorize(
self,
use_na_sentinel: bool = True,
) -> tuple[np.ndarray, ExtensionArray]:
arr = self._data
mask = self._mask
# Use a sentinel for na; recode and add NA to uniques if necessary below
codes, uniques = factorize_array(arr, use_na_sentinel=True, mask=mask)
# check that factorize_array correctly preserves dtype.
assert uniques.dtype == self.dtype.numpy_dtype, (uniques.dtype, self.dtype)
has_na = mask.any()
if use_na_sentinel or not has_na:
size = len(uniques)
else:
# Make room for an NA value
size = len(uniques) + 1
uniques_mask = np.zeros(size, dtype=bool)
if not use_na_sentinel and has_na:
na_index = mask.argmax()
# Insert na with the proper code
if na_index == 0:
na_code = np.intp(0)
else:
na_code = codes[:na_index].max() + 1
codes[codes >= na_code] += 1
codes[codes == -1] = na_code
# dummy value for uniques; not used since uniques_mask will be True
uniques = np.insert(uniques, na_code, 0)
uniques_mask[na_code] = True
uniques_ea = self._simple_new(uniques, uniques_mask)
return codes, uniques_ea
@doc(ExtensionArray._values_for_argsort)
def _values_for_argsort(self) -> np.ndarray:
return self._data
def value_counts(self, dropna: bool = True) -> Series:
"""
Returns a Series containing counts of each unique value.
Parameters
----------
dropna : bool, default True
Don't include counts of missing values.
Returns
-------
counts : Series
See Also
--------
Series.value_counts
"""
from pandas import (
Index,
Series,
)
from pandas.arrays import IntegerArray
keys, value_counts, na_counter = algos.value_counts_arraylike(
self._data, dropna=dropna, mask=self._mask
)
mask_index = np.zeros((len(value_counts),), dtype=np.bool_)
mask = mask_index.copy()
if na_counter > 0:
mask_index[-1] = True
arr = IntegerArray(value_counts, mask)
index = Index(
self.dtype.construct_array_type()(
keys, mask_index # type: ignore[arg-type]
)
)
return Series(arr, index=index, name="count", copy=False)
def _mode(self, dropna: bool = True) -> Self:
if dropna:
result = mode(self._data, dropna=dropna, mask=self._mask)
res_mask = np.zeros(result.shape, dtype=np.bool_)
else:
result, res_mask = mode(self._data, dropna=dropna, mask=self._mask)
result = type(self)(result, res_mask) # type: ignore[arg-type]
return result[result.argsort()]
@doc(ExtensionArray.equals)
def equals(self, other) -> bool:
if type(self) != type(other):
return False
if other.dtype != self.dtype:
return False
# GH#44382 if e.g. self[1] is np.nan and other[1] is pd.NA, we are NOT
# equal.
if not np.array_equal(self._mask, other._mask):
return False
left = self._data[~self._mask]
right = other._data[~other._mask]
return array_equivalent(left, right, strict_nan=True, dtype_equal=True)
def _quantile(
self, qs: npt.NDArray[np.float64], interpolation: str
) -> BaseMaskedArray:
"""
Dispatch to quantile_with_mask, needed because we do not have
_from_factorized.
Notes
-----
We assume that all impacted cases are 1D-only.
"""
res = quantile_with_mask(
self._data,
mask=self._mask,
# TODO(GH#40932): na_value_for_dtype(self.dtype.numpy_dtype)
# instead of np.nan
fill_value=np.nan,
qs=qs,
interpolation=interpolation,
)
if self._hasna:
# Our result mask is all-False unless we are all-NA, in which
# case it is all-True.
if self.ndim == 2:
# I think this should be out_mask=self.isna().all(axis=1)
# but am holding off until we have tests
raise NotImplementedError
if self.isna().all():
out_mask = np.ones(res.shape, dtype=bool)
if is_integer_dtype(self.dtype):
# We try to maintain int dtype if possible for not all-na case
# as well
res = np.zeros(res.shape, dtype=self.dtype.numpy_dtype)
else:
out_mask = np.zeros(res.shape, dtype=bool)
else:
out_mask = np.zeros(res.shape, dtype=bool)
return self._maybe_mask_result(res, mask=out_mask)
# ------------------------------------------------------------------
# Reductions
def _reduce(
self, name: str, *, skipna: bool = True, keepdims: bool = False, **kwargs
):
if name in {"any", "all", "min", "max", "sum", "prod", "mean", "var", "std"}:
result = getattr(self, name)(skipna=skipna, **kwargs)
else:
# median, skew, kurt, sem
data = self._data
mask = self._mask
op = getattr(nanops, f"nan{name}")
axis = kwargs.pop("axis", None)
result = op(data, axis=axis, skipna=skipna, mask=mask, **kwargs)
if keepdims:
if isna(result):
return self._wrap_na_result(name=name, axis=0, mask_size=(1,))
else:
result = result.reshape(1)
mask = np.zeros(1, dtype=bool)
return self._maybe_mask_result(result, mask)
if isna(result):
return libmissing.NA
else:
return result
def _wrap_reduction_result(self, name: str, result, *, skipna, axis):
if isinstance(result, np.ndarray):
if skipna:
# we only retain mask for all-NA rows/columns
mask = self._mask.all(axis=axis)
else:
mask = self._mask.any(axis=axis)
return self._maybe_mask_result(result, mask)
return result
def _wrap_na_result(self, *, name, axis, mask_size):
mask = np.ones(mask_size, dtype=bool)
float_dtyp = "float32" if self.dtype == "Float32" else "float64"
if name in ["mean", "median", "var", "std", "skew", "kurt"]:
np_dtype = float_dtyp
elif name in ["min", "max"] or self.dtype.itemsize == 8:
np_dtype = self.dtype.numpy_dtype.name
else:
is_windows_or_32bit = is_platform_windows() or not IS64
int_dtyp = "int32" if is_windows_or_32bit else "int64"
uint_dtyp = "uint32" if is_windows_or_32bit else "uint64"
np_dtype = {"b": int_dtyp, "i": int_dtyp, "u": uint_dtyp, "f": float_dtyp}[
self.dtype.kind
]
value = np.array([1], dtype=np_dtype)
return self._maybe_mask_result(value, mask=mask)
def _wrap_min_count_reduction_result(
self, name: str, result, *, skipna, min_count, axis
):
if min_count == 0 and isinstance(result, np.ndarray):
return self._maybe_mask_result(result, np.zeros(result.shape, dtype=bool))
return self._wrap_reduction_result(name, result, skipna=skipna, axis=axis)
def sum(
self,
*,
skipna: bool = True,
min_count: int = 0,
axis: AxisInt | None = 0,
**kwargs,
):
nv.validate_sum((), kwargs)
result = masked_reductions.sum(
self._data,
self._mask,
skipna=skipna,
min_count=min_count,
axis=axis,
)
return self._wrap_min_count_reduction_result(
"sum", result, skipna=skipna, min_count=min_count, axis=axis
)
def prod(
self,
*,
skipna: bool = True,
min_count: int = 0,
axis: AxisInt | None = 0,
**kwargs,
):
nv.validate_prod((), kwargs)
result = masked_reductions.prod(
self._data,
self._mask,
skipna=skipna,
min_count=min_count,
axis=axis,
)
return self._wrap_min_count_reduction_result(
"prod", result, skipna=skipna, min_count=min_count, axis=axis
)
def mean(self, *, skipna: bool = True, axis: AxisInt | None = 0, **kwargs):
nv.validate_mean((), kwargs)
result = masked_reductions.mean(
self._data,
self._mask,
skipna=skipna,
axis=axis,
)
return self._wrap_reduction_result("mean", result, skipna=skipna, axis=axis)
def var(
self, *, skipna: bool = True, axis: AxisInt | None = 0, ddof: int = 1, **kwargs
):
nv.validate_stat_ddof_func((), kwargs, fname="var")
result = masked_reductions.var(
self._data,
self._mask,
skipna=skipna,
axis=axis,
ddof=ddof,
)
return self._wrap_reduction_result("var", result, skipna=skipna, axis=axis)
def std(
self, *, skipna: bool = True, axis: AxisInt | None = 0, ddof: int = 1, **kwargs
):
nv.validate_stat_ddof_func((), kwargs, fname="std")
result = masked_reductions.std(
self._data,
self._mask,
skipna=skipna,
axis=axis,
ddof=ddof,
)
return self._wrap_reduction_result("std", result, skipna=skipna, axis=axis)
def min(self, *, skipna: bool = True, axis: AxisInt | None = 0, **kwargs):
nv.validate_min((), kwargs)
result = masked_reductions.min(
self._data,
self._mask,
skipna=skipna,
axis=axis,
)
return self._wrap_reduction_result("min", result, skipna=skipna, axis=axis)
def max(self, *, skipna: bool = True, axis: AxisInt | None = 0, **kwargs):
nv.validate_max((), kwargs)
result = masked_reductions.max(
self._data,
self._mask,
skipna=skipna,
axis=axis,
)
return self._wrap_reduction_result("max", result, skipna=skipna, axis=axis)
def map(self, mapper, na_action=None):
return map_array(self.to_numpy(), mapper, na_action=na_action)
def any(self, *, skipna: bool = True, axis: AxisInt | None = 0, **kwargs):
"""
Return whether any element is truthy.
Returns False unless there is at least one element that is truthy.
By default, NAs are skipped. If ``skipna=False`` is specified and
missing values are present, similar :ref:`Kleene logic <boolean.kleene>`
is used as for logical operations.
.. versionchanged:: 1.4.0
Parameters
----------
skipna : bool, default True
Exclude NA values. If the entire array is NA and `skipna` is
True, then the result will be False, as for an empty array.
If `skipna` is False, the result will still be True if there is
at least one element that is truthy, otherwise NA will be returned
if there are NA's present.
axis : int, optional, default 0
**kwargs : any, default None
Additional keywords have no effect but might be accepted for
compatibility with NumPy.
Returns
-------
bool or :attr:`pandas.NA`
See Also
--------
numpy.any : Numpy version of this method.
BaseMaskedArray.all : Return whether all elements are truthy.
Examples
--------
The result indicates whether any element is truthy (and by default
skips NAs):
>>> pd.array([True, False, True]).any()
True
>>> pd.array([True, False, pd.NA]).any()
True
>>> pd.array([False, False, pd.NA]).any()
False
>>> pd.array([], dtype="boolean").any()
False
>>> pd.array([pd.NA], dtype="boolean").any()
False
>>> pd.array([pd.NA], dtype="Float64").any()
False
With ``skipna=False``, the result can be NA if this is logically
required (whether ``pd.NA`` is True or False influences the result):
>>> pd.array([True, False, pd.NA]).any(skipna=False)
True
>>> pd.array([1, 0, pd.NA]).any(skipna=False)
True
>>> pd.array([False, False, pd.NA]).any(skipna=False)
<NA>
>>> pd.array([0, 0, pd.NA]).any(skipna=False)
<NA>
"""
nv.validate_any((), kwargs)
values = self._data.copy()
# error: Argument 3 to "putmask" has incompatible type "object";
# expected "Union[_SupportsArray[dtype[Any]],
# _NestedSequence[_SupportsArray[dtype[Any]]],
# bool, int, float, complex, str, bytes,
# _NestedSequence[Union[bool, int, float, complex, str, bytes]]]"
np.putmask(values, self._mask, self._falsey_value) # type: ignore[arg-type]
result = values.any()
if skipna:
return result
else:
if result or len(self) == 0 or not self._mask.any():
return result
else:
return self.dtype.na_value
def all(self, *, skipna: bool = True, axis: AxisInt | None = 0, **kwargs):
"""
Return whether all elements are truthy.
Returns True unless there is at least one element that is falsey.
By default, NAs are skipped. If ``skipna=False`` is specified and
missing values are present, similar :ref:`Kleene logic <boolean.kleene>`
is used as for logical operations.
.. versionchanged:: 1.4.0
Parameters
----------
skipna : bool, default True
Exclude NA values. If the entire array is NA and `skipna` is
True, then the result will be True, as for an empty array.
If `skipna` is False, the result will still be False if there is
at least one element that is falsey, otherwise NA will be returned
if there are NA's present.
axis : int, optional, default 0
**kwargs : any, default None
Additional keywords have no effect but might be accepted for
compatibility with NumPy.
Returns
-------
bool or :attr:`pandas.NA`
See Also
--------
numpy.all : Numpy version of this method.
BooleanArray.any : Return whether any element is truthy.
Examples
--------
The result indicates whether all elements are truthy (and by default
skips NAs):
>>> pd.array([True, True, pd.NA]).all()
True
>>> pd.array([1, 1, pd.NA]).all()
True
>>> pd.array([True, False, pd.NA]).all()
False
>>> pd.array([], dtype="boolean").all()
True
>>> pd.array([pd.NA], dtype="boolean").all()
True
>>> pd.array([pd.NA], dtype="Float64").all()
True
With ``skipna=False``, the result can be NA if this is logically
required (whether ``pd.NA`` is True or False influences the result):
>>> pd.array([True, True, pd.NA]).all(skipna=False)
<NA>
>>> pd.array([1, 1, pd.NA]).all(skipna=False)
<NA>
>>> pd.array([True, False, pd.NA]).all(skipna=False)
False
>>> pd.array([1, 0, pd.NA]).all(skipna=False)
False
"""
nv.validate_all((), kwargs)
values = self._data.copy()
# error: Argument 3 to "putmask" has incompatible type "object";
# expected "Union[_SupportsArray[dtype[Any]],
# _NestedSequence[_SupportsArray[dtype[Any]]],
# bool, int, float, complex, str, bytes,
# _NestedSequence[Union[bool, int, float, complex, str, bytes]]]"
np.putmask(values, self._mask, self._truthy_value) # type: ignore[arg-type]
result = values.all(axis=axis)
if skipna:
return result
else:
if not result or len(self) == 0 or not self._mask.any():
return result
else:
return self.dtype.na_value
def interpolate(
self,
*,
method: InterpolateOptions,
axis: int,
index,
limit,
limit_direction,
limit_area,
copy: bool,
**kwargs,
) -> FloatingArray:
"""
See NDFrame.interpolate.__doc__.
"""
# NB: we return type(self) even if copy=False
if self.dtype.kind == "f":
if copy:
data = self._data.copy()
mask = self._mask.copy()
else:
data = self._data
mask = self._mask
elif self.dtype.kind in "iu":
copy = True
data = self._data.astype("f8")
mask = self._mask.copy()
else:
raise NotImplementedError(
f"interpolate is not implemented for dtype={self.dtype}"
)
missing.interpolate_2d_inplace(
data,
method=method,
axis=0,
index=index,
limit=limit,
limit_direction=limit_direction,
limit_area=limit_area,
mask=mask,
**kwargs,
)
if not copy:
return self # type: ignore[return-value]
if self.dtype.kind == "f":
return type(self)._simple_new(data, mask) # type: ignore[return-value]
else:
from pandas.core.arrays import FloatingArray
return FloatingArray._simple_new(data, mask)
def _accumulate(
self, name: str, *, skipna: bool = True, **kwargs
) -> BaseMaskedArray:
data = self._data
mask = self._mask
op = getattr(masked_accumulations, name)
data, mask = op(data, mask, skipna=skipna, **kwargs)
return self._simple_new(data, mask)
# ------------------------------------------------------------------
# GroupBy Methods
def _groupby_op(
self,
*,
how: str,
has_dropped_na: bool,
min_count: int,
ngroups: int,
ids: npt.NDArray[np.intp],
**kwargs,
):
from pandas.core.groupby.ops import WrappedCythonOp
kind = WrappedCythonOp.get_kind_from_how(how)
op = WrappedCythonOp(how=how, kind=kind, has_dropped_na=has_dropped_na)
# libgroupby functions are responsible for NOT altering mask
mask = self._mask
if op.kind != "aggregate":
result_mask = mask.copy()
else:
result_mask = np.zeros(ngroups, dtype=bool)
if how == "rank" and kwargs.get("na_option") in ["top", "bottom"]:
result_mask[:] = False
res_values = op._cython_op_ndim_compat(
self._data,
min_count=min_count,
ngroups=ngroups,
comp_ids=ids,
mask=mask,
result_mask=result_mask,
**kwargs,
)
if op.how == "ohlc":
arity = op._cython_arity.get(op.how, 1)
result_mask = np.tile(result_mask, (arity, 1)).T
if op.how in ["idxmin", "idxmax"]:
# Result values are indexes to take, keep as ndarray
return res_values
else:
# res_values should already have the correct dtype, we just need to
# wrap in a MaskedArray
return self._maybe_mask_result(res_values, result_mask)
def transpose_homogeneous_masked_arrays(
masked_arrays: Sequence[BaseMaskedArray],
) -> list[BaseMaskedArray]:
"""Transpose masked arrays in a list, but faster.
Input should be a list of 1-dim masked arrays of equal length and all have the
same dtype. The caller is responsible for ensuring validity of input data.
"""
masked_arrays = list(masked_arrays)
dtype = masked_arrays[0].dtype
values = [arr._data.reshape(1, -1) for arr in masked_arrays]
transposed_values = np.concatenate(
values,
axis=0,
out=np.empty(
(len(masked_arrays), len(masked_arrays[0])),
order="F",
dtype=dtype.numpy_dtype,
),
)
masks = [arr._mask.reshape(1, -1) for arr in masked_arrays]
transposed_masks = np.concatenate(
masks, axis=0, out=np.empty_like(transposed_values, dtype=bool)
)
arr_type = dtype.construct_array_type()
transposed_arrays: list[BaseMaskedArray] = []
for i in range(transposed_values.shape[1]):
transposed_arr = arr_type(transposed_values[:, i], mask=transposed_masks[:, i])
transposed_arrays.append(transposed_arr)
return transposed_arrays
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